Galaxy History ' TogoWS Test'


DatasetAnnotation
1: exon
4,094 regions
format: bed, database: ?
Info: UCSC Main on Human: exoniphy (chr22:1-51304566)
display in IGB Local Web
1.Chrom2.Start3.End4.Name56.Strand
chr221610051416100648chr22.1.1_cds_0_0_chr22_16100515_r0-
chr221611878616118913chr22.1.3_cds_0_0_chr22_16118787_r0-
chr221634943516349564chr22.3.3_cds_0_0_chr22_16349436_f0+
chr221635024316350316chr22.3.4_cds_0_0_chr22_16350244_f0+
chr221635054916350633chr22.3.5_cds_0_0_chr22_16350550_f0+
chr221635207116352401chr22.3.6_cds_0_0_chr22_16352072_f0+
None
2: UCSC Main on Human: snp130 (chr22:1-51304566)
312,165 regions
format: bed, database: hg19
Info: UCSC Main on Human: snp130 (chr22:1-51304566)
display at UCSC main
display in IGB Local Web
display at Ensembl Current
display at RViewer main
1.Chrom2.Start3.End4.Name56.Strand
chr221605003516050036rs40470560+
chr221605025116050252rs30160360+
chr221605035216050353rs563428150+
chr221605035216050353rs23343860+
chr221605037416050375rs28448820+
chr221605040716050408rs28448830+
3: Join on data 2 and data 1
4,542 regions
format: interval, database: hg19
display at UCSC main
display at Ensembl Current
display at RViewer main
1.Chrom2.Start3.End4.Name56.Strand789101112
chr221611878616118913chr22.1.3_cds_0_0_chr22_16118787_r0-chr221611883916118840rs49811640+
chr221634943516349564chr22.3.3_cds_0_0_chr22_16349436_f0+chr221634956316349565rs714319550-
chr221634943516349564chr22.3.3_cds_0_0_chr22_16349436_f0+chr221634956316349564rs21580400+
chr221635024316350316chr22.3.4_cds_0_0_chr22_16350244_f0+chr221635024416350245rs29052950+
chr221635024316350316chr22.3.4_cds_0_0_chr22_16350244_f0+chr221635025816350259rs119124790+
chr221635024316350316chr22.3.4_cds_0_0_chr22_16350244_f0+chr221635029216350293rs615789760+
4: Group on data 3
2,049 lines
format: tabular, database: hg19
Info: --Group by c4: count[c4]
12
chr22.1.3_cds_0_0_chr22_16118787_r1
chr22.10.10_cds_0_0_chr22_17446068_r1
chr22.10.11_cds_0_0_chr22_17446990_r2
chr22.10.13_cds_0_0_chr22_17450503_r8
chr22.10.16_cds_0_0_chr22_17472763_r1
chr22.10.8_cds_0_0_chr22_17444618_r2
5: Sort on data 4
2,049 lines
format: tabular, database: hg19
12
chr22.60.2_cds_0_0_chr22_22735410_f64
chr22.60.1_cds_0_0_chr22_22712304_f59
chr22.65.3_cds_0_0_chr22_23243156_f34
chr22.8.9_cds_0_0_chr22_17177834_r28
chr22.60.4_cds_0_0_chr22_22764305_f26
chr22.209.3_cds_0_0_chr22_37602772_r25
6: DBCLS Twitter Notifier on data 5
1 lines
format: txt, database: hg19
finished. http://galaxy.dbcls.jp/datasets/68/display/index @acopom
7: UCSC Main on Human: refGene (chr22:1-51304566)
794 regions
format: bed, database: hg19
Info: UCSC Main on Human: refGene (chr22:1-51304566)
display at UCSC main
display at UCSC main
display in IGB Local Web
display at Ensembl Current
display at RViewer main
1.Chrom2.Start3.End4.Name56.Strand789101112
chr221625633116287937NM_0011362130-1625818516287885011346,119,167,45,71,71,138,107,174,115,684,0,1853,10597,11805,13541,18875,21416,22863,25813,26146,30922,
chr221644882516449804NM_0010052390-164488251644980401979,0,
chr221707164717073700NM_0144060-1707176617073440012053,0,
chr221708280017129719NR_0015910+171297191712971909305,236,102,57,51,162,90,123,303,0,9747,12166,20930,35129,36668,45257,45752,46616,
chr221726431217302584NM_1758780-172645081728896304987,254,345,88,0,16348,24316,38184,
chr221730836317310225NR_0036070+173102251731022502587,794,0,1068,
8: TogoWS Search
1 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'ncbi-nucleotide', query = 'NM_014406'
1
51093856
9: TogoWS Get Value of a Given Field on data 8
1 lines
format: tabular, database: ?
Info: Getting TogoWS entry resource with database = 'ncbi-genbank', field = 'definition'
12
51093856Homo sapiens chaperonin containing TCP1, subunit 8 (theta)-like 2 (CCT8L2), mRNA.
11: TogoWS Search
1 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'ncbi-genbank', query = 'NM_014406'
1
51093856
12: Filter on data 5
6 lines
format: tabular, database: hg19
Info: Filtering with c2>=20,
kept 0.29% of 2049 lines.
12
chr22.60.2_cds_0_0_chr22_22735410_f64
chr22.60.1_cds_0_0_chr22_22712304_f59
chr22.65.3_cds_0_0_chr22_23243156_f34
chr22.8.9_cds_0_0_chr22_17177834_r28
chr22.60.4_cds_0_0_chr22_22764305_f26
chr22.209.3_cds_0_0_chr22_37602772_r25
13: Join two Queries on data 12 and data 1
6 regions
format: bed, database: hg19
display at UCSC main
display at UCSC main
display in IGB Local Web
display at Ensembl Current
display at RViewer main
1.Chrom2.Start3.End4.Name56.Strand78
chr221717783317178787chr22.8.9_cds_0_0_chr22_17177834_r0-chr22.8.9_cds_0_0_chr22_17177834_r28
chr222271230322712614chr22.60.1_cds_0_0_chr22_22712304_f0+chr22.60.1_cds_0_0_chr22_22712304_f59
chr222273540922735720chr22.60.2_cds_0_0_chr22_22735410_f0+chr22.60.2_cds_0_0_chr22_22735410_f64
chr222276430422764587chr22.60.4_cds_0_0_chr22_22764305_f0+chr22.60.4_cds_0_0_chr22_22764305_f26
chr222324315523243475chr22.65.3_cds_0_0_chr22_23243156_f0+chr22.65.3_cds_0_0_chr22_23243156_f34
chr223760277137603842chr22.209.3_cds_0_0_chr22_37602772_r0-chr22.209.3_cds_0_0_chr22_37602772_r25
14: Join on data 13 and data 7
1 regions
format: interval, database: hg19
display at UCSC main
display at UCSC main
display at Ensembl Current
display at RViewer main
1.Chrom2.Start3.End4.Name56.Strand7891011121314151617181920
chr223760224537608353NM_0010510-3760258537603842021633,489,0,5619,chr223760277137603842chr22.209.3_cds_0_0_chr22_37602772_r0-chr22.209.3_cds_0_0_chr22_37602772_r25
15: Cut on data 14
1 lines
format: tabular, database: hg19
1
NM_001051
17: TogoWS Search
1 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'ncbi-genbank', query = 'NM_001051 '
1
44890055
19: TogoWS Search with History on data 15
1 lines
format: tabular, database: hg19
Info: Searching TogoWS with database = 'ncbi-nucleotide', query = 'NM_001051'
1
44890055
20: TogoWS Get Value of a Given Field on data 19
1 lines
format: tabular, database: hg19
Info: Getting TogoWS entry resource with database = 'ncbi-genbank', field = 'definition'
12
44890055Homo sapiens somatostatin receptor 3 (SSTR3), mRNA.
21: TogoWS Search
2 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'kegg-compound', query = 'somatostatin'
1
cpd:C16021
cpd:C16022
27: TogoWS Search
100 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'ebi-uniprot', query = 'somatostatin'
1
Q90XE1_ACITR
Q6Q7A1_CHICK
D0ENQ9_BUBBU
A9Y0H1_PAPAN
Q100N7_GADMO
Q6UDE9_XENLA
28: Cut on data 20
1 lines
format: tabular, database: hg19
1
Homo sapiens somatostatin receptor 3 (SSTR3), mRNA.
29: TogoWS Search with History on data 28
1 lines
format: tabular, database: hg19
Info: Searching TogoWS with database = 'ebi-uniprot', query = 'Homo sapiens somatostatin receptor 3 (SSTR3), mRNA.'
1
SSR3_HUMAN
39: TogoWS Search
1 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'ncbi-genbank', query = 'NM_001051 '
1
44890055
40: TogoWS Search
2 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'kegg-compound', query = 'somatostatin'
1
C16021
C16022
43: TogoWS Get Value of a Given Field on data 40
2 lines
format: tabular, database: ?
Info: Getting TogoWS entry resource with database = 'kegg-compound', field = 'pathways'
123
C16021ko04080Neuroactive ligand-receptor interaction
C16022ko04080Neuroactive ligand-receptor interaction
44: Cut on data 43
2 lines
format: tabular, database: ?
1
ko04080
ko04080
46: TogoWS Get Value of a Given Field on data 40
2 lines
format: tabular, database: ?
Info: Getting TogoWS entry resource with database = 'kegg-compound', field = 'kcf'
12
C16021
C16022
50: Filter on data 46
2 lines
format: tabular, database: ?
Info: Filtering with c2>=10,
kept 100.00% of 2 lines.
12
C16021
C16022
51: Filter on data 5
36 lines
format: tabular, database: hg19
Info: Filtering with c2>=10,
kept 1.76% of 2049 lines.
12
chr22.60.2_cds_0_0_chr22_22735410_f64
chr22.60.1_cds_0_0_chr22_22712304_f59
chr22.65.3_cds_0_0_chr22_23243156_f34
chr22.8.9_cds_0_0_chr22_17177834_r28
chr22.60.4_cds_0_0_chr22_22764305_f26
chr22.209.3_cds_0_0_chr22_37602772_r25
52: Join two Queries on data 51 and data 1
36 regions
format: bed, database: hg19
display at UCSC main
display at UCSC main
display in IGB Local Web
display at Ensembl Current
display at RViewer main
1.Chrom2.Start3.End4.Name56.Strand78
chr221635207116352401chr22.3.6_cds_0_0_chr22_16352072_f0+chr22.3.6_cds_0_0_chr22_16352072_f11
chr221717783317178787chr22.8.9_cds_0_0_chr22_17177834_r0-chr22.8.9_cds_0_0_chr22_17177834_r28
chr221718204317182202chr22.8.13_cds_0_0_chr22_17182044_r0-chr22.8.13_cds_0_0_chr22_17182044_r15
chr221758924217589978chr22.11.13_cds_0_0_chr22_17589243_f0+chr22.11.13_cds_0_0_chr22_17589243_f10
chr221830007618301859chr22.19.2_cds_0_0_chr22_18300077_r0-chr22.19.2_cds_0_0_chr22_18300077_r12
chr221878195318782304chr22.23.16_cds_0_0_chr22_18781954_r0-chr22.23.16_cds_0_0_chr22_18781954_r15
53: Join on data 52 and data 7
33 regions
format: interval, database: hg19
display at UCSC main
display at UCSC main
display at Ensembl Current
display at RViewer main
1.Chrom2.Start3.End4.Name56.Strand7891011121314151617181920
chr22 17565848 17591387 NM_014339 0 + 17565981 17590710 0 13 271,25,147,113,127,48,164,84,85,12,102,42,2191, 0,12103,12838,13816,15396,17037,17180,18535,19767,20632,20894,22768,23348, chr22 17589242 17589978 chr22.11.13_cds_0_0_chr22_17589243_f 0 + chr22.1
1.13_cds_0_0_chr22_17589243_f 10
chr22 18270417 18507325 NM_015241 0 - 18273497 18389578 0 32 3265,74,100,94,111,95,1819,83,141,114,138,254,196,88,89,187,174,63,113,197,148,97,127,116,258,101,156,102,117,208,338,279, 0,3346,3550,21192,23051,29038,29659,33775,34378,35295,39992,44202,54170,
77247,78272,84185,98226,99518,99671,101382,103833,106156,107632,108594,109072,111796,113190,114226,114979,116980,118897,236629, chr22 18300076 18301859 chr22.19.2_cds_0_0_chr22_18300077_r 0 - chr22.19.2_cds_0_0_chr22_18300077_r 12
chr22 18900294 18923814 NM_016335 0 - 18900687 18923800 0 14 581,89,99,176,147,93,82,80,117,65,150,35,209,287, 0,656,4108,5534,6669,6924,8560,9543,10035,10333,12269,12906,18208,23233, chr22 18905828 18906004 chr22.25.2_cds_0_0_chr22_18905829_r 0 - chr22.25
.2_cds_0_0_chr22_18905829_r 10
54: Cut on data 53
33 lines
format: tabular, database: hg19
1
NM_014339
NM_015241
NM_016335
NM_022719
NM_053006
NM_058004
57: TogoWS Search with History on data 15
1 lines
format: tabular, database: hg19
Info: Searching TogoWS with database = 'ncbi-nucleotide', query = 'NM_001051'
1
44890055
58: Pasted Entry
1 lines
format: txt, database: ?
Info: uploaded multi-byte char file
トランス脂肪酸
59: PNE Search on data 58
empty
format: tabular, database: ?
Info: Searching PNE
60: Pasted Entry
1 lines
format: txt, database: ?
Info: uploaded multi-byte char file
脂肪酸
61: PNE Search on data 60
50 lines
format: tabular, database: ?
Info: Searching PNE
12
蛋白質核酸酵素:ラン藻における膜系の構築と低温耐性の機構http://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=1991&number=3609&file=dEYvPbQS7qtzEH1BCXXNNg==
蛋白質核酸酵素:コンビナトリアル・バイオシンセシス : ポリケチド化合物を例としてhttp://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=1998&number=4309&file=YJRyP28vhq6DE/xJCvU2QA==
蛋白質核酸酵素:リポ多糖をもたないグラム陰性細菌http://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=1992&number=3702&file=YseRyfKJXXTh2J6puxL1Og==
蛋白質核酸酵素:血中脂質転送蛋白質http://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=1994&number=3913&file=TL7hmF2UngvZFuPLUSoaZ3lvQ==
蛋白質核酸酵素:脂質代謝 : ペルオキシソームの機能(1)http://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=1990&number=3508&file=dsIe/PLUS/AORj0uOFZVEauwQ==
蛋白質核酸酵素:膜結合型転写因子SREBP : 小胞体-核間情報伝達と脂質代謝調節http://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=2000&number=4516&file=ISTzNYjvJ9Xa7mrdR2ZvwA==
62: TogoWS Search
100 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'ncbi-pubmed', query = 'p53'
1
20578176
20577896
20577877
20577801
20577783
20577265
63: TogoWS Get Value of a Given Field on data 62
100 lines
format: tabular, database: ?
Info: Getting TogoWS entry resource with database = 'ncbi-pubmed', field = 'title'
12
20578176Up-regulation of interleukin-17 expression by human papillomavirus type 16 E6 in nonsmall cell lung cancer.
20577896Anoikis triggers Mdm2-dependent p53 degradation.
20577877CD8+ T cell recognition of polymorphic wild-type sequence p53(65-73) peptides in squamous cell carcinoma of the head and neck.
20577801Continuous oxidative stress due to activation of polyamine catabolism accelerates aging and protects against hepatotoxic insults.
20577783From GC-rich DNA binding to the repression of survivin gene for quercetin nickel (II) complex: implications for cancer therapy.
20577265CHK2-independent induction of telomere dysfunction checkpoints in stem and progenitor cells.
64: TogoWS Search
1 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'ncbi-nucleotide', query = 'NM_014339'
1
94538364
65: Pasted Entry
2 lines
format: txt, database: ?
Info: uploaded txt file
NM_014339
NM_015241