Galaxy History ' Unnamed history'


DatasetAnnotation
1: UCSC Main on Human: knownGene (chr21:33026870-33041241)
data
format: genetrack, database: hg19
binary data
1: UCSC Main on Human: knownGene (chr21:33026870-33041241)
5 regions
format: bed, database: hg19
Info: UCSC Main on Human: knownGene (chr21:33026870-33041241)
display at UCSC main
display at UCSC main
display in IGB Local Web
display at Ensembl Current
display at RViewer main
1.Chrom2.Start3.End4.Name56.Strand
chr213302687033027740uc002yoz.1_utr5_0_0_chr21_33026871_r0-
chr213303024633030540uc002yoz.1_utr5_1_0_chr21_33030247_r0-
chr213303170933031813uc002yoz.1_utr5_2_0_chr21_33031710_r0-
chr213303193433032082uc002ypa.2_utr5_0_0_chr21_33031935_f0+
chr213303197833032082uc002ypb.2_utr5_0_0_chr21_33031979_f0+
2: UCSC Test on Human: knownGene (genome)
77,614 regions
format: bed, database: hg19
Info: UCSC Test on Human: knownGene (genome)
display at UCSC main
display at UCSC main
display in IGB Local Web
display at Ensembl Current
display at RViewer main
1.Chrom2.Start3.End4.Name56.Strand789101112
chr11187314409uc001aaa.30+118731187303354,109,1189,0,739,1347,
chr11187314409uc010nxq.10+121891363903354,127,1007,0,721,1529,
chr11187314409uc010nxr.10+118731187303354,52,1189,0,772,1347,
chr11436216765uc009vis.20-143621436204467,69,147,159,0,607,1433,2244,
chr11685717751uc009vjc.10-168571685702198,519,0,375,
chr11579518061uc009vjd.20-157951579505152,159,198,136,456,0,811,1062,1437,1810,
3: UCSC Main on Human: knownGene (chr7:27120141-30601144)
104 regions
format: bed, database: hg18
Info: UCSC Main on Human: knownGene (chr7:27120141-30601144)
display at UCSC main
display at UCSC main
display in IGB Local Web
display at Ensembl May 2009
display at RViewer main
1.Chrom2.Start3.End4.Name56.Strand
chr72712014127120341uc003syi.1_up_200_chr7_27120142_r0-
chr72712573927125939uc003syj.1_up_200_chr7_27125740_r0-
chr72713316427133364uc003syk.1_up_200_chr7_27133165_r0-
chr72712688027127080uc010kux.1_up_200_chr7_27126881_f0+
chr72712786227128062uc003syl.2_up_200_chr7_27127863_f0+
chr72713692427137124uc003sym.2_up_200_chr7_27136925_r0-
4: Pasted Entry
1 lines
format: txt, database: ?
Info: uploaded txt file
p53
5: PNE Search on data 4
50 lines
format: tabular, database: ?
Info: Searching PNE
12
蛋白質核酸酵素:がん抑制遺伝子p53ファミリー研究の最近の進展http://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=1999&number=4402&file=p630GzSfV3VWrXAPgRVFrA==
蛋白質核酸酵素:DNAダメージによる p53 蛋白質の癌抑制シグナルと : ヒト癌における遺伝子変異http://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=2000&number=4510&file=8khnTRCeFyza7mrdR2ZvwA==
蛋白質核酸酵素:DNA腫瘍ウイルスの分子生物学の現状http://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=1994&number=3903&file=WCClwdJ3WbEhtsJ9PCFnAg==
蛋白質核酸酵素:SV40, ポリオーマウイルス, アデノウイルスの分子生物学 : 最近の動向IIhttp://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=1993&number=3808&file=LPLUSZdHdG9Y5DE0gQxXUFAFw==
蛋白質核酸酵素:X線によるDNA傷害とアポトーシスhttp://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=2004&number=4905&file=HZYPufwc4f3BCDnIyJUwVg==
蛋白質核酸酵素:細胞老化による癌抑制 : 老化と癌化の接点http://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=2006&number=5101&file=jdbmkowKznUPENCG24EJ5w==
None
10: Pasted Entry
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11: UCSC Main on Human: knownGene (chr12:110708729-110732167)
374 bytes
An error occurred running this job: Unable to finish job2
12: Pasted Entry
1 lines
format: txt, database: ?
Info: uploaded txt file
test
13: Pasted Entry
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An error occurred running this job: failure running job 2944: (OperationalError) database is locked None None
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16: Pasted Entry
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An error occurred running this job: failure preparing job
18: Pasted Entry
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An error occurred running this job: failure running job 2950: (OperationalError) database is locked None None
19: Pasted Entry
2 lines
format: txt, database: ?
Info: uploaded txt file
test
dayo
20: TogoWS Search
1 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'ddbj-ddbj', query = 'genome'
1
AB596048AB596049AB597004FN654503FN654504FN654505FN654506FN654507FN655454FN655455FN655456FN655457FN655458FN655459FN655460FN656592FN656593FN656594FN656595FN656596FN656597FN656598FN656599FN656600FN656601FN656602FN657666FN657667FN657668FN657669FN657670FN657671FN657672FN657673FN657674FN658327FN658328FN658329FN658330FN597523GL770540GL770539GL770538FN655461CU538971FN653480FN653481FN653482FN653483FN653484FN653485FN653486FN654508FN654509FN655462FN655463FN655464FN653487FN653488FN653489FN653490FN653491FN655465FQ482122FQ482133FQ311453FQ311454FQ311455FQ311456FQ311457FQ311458FQ311459HI951746HI951747HI951748HI951749HI951750HI954251HI954258HI954260HI954265HI954278HI954279HI954280HI954281HI954282HI954283FQ377764FQ377765FQ377766FQ377767FQ377768FQ377769FQ377770FQ377771FQ377772FQ377773FQ377774FQ377775FQ311936
21: TogoWS Search
100 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'ncbi-pubmed', query = 'p53'
1
21344396
21344373
21344355
21344307
21343879
21343334
22: TogoWS Get Value of a Given Field on data 21
0 bytes
An error occurred running this job: Getting TogoWS entry resource with database = 'ncbi-pubmed', field = 'title'
/opt/services/galaxy/middleware/ruby-1.8.6/lib/ruby/1.8/timeout.rb:60:in `rbuf_fill': execution expired (Timeout::Error)
from /opt/services/galaxy/middleware/ruby-1.8.6/lib/ruby
23: TogoWS Search
100 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'ncbi-pubmed', query = 'p53'
1
23293699
23293027
23292895
23292869
23292286
23292006
24: TogoWS Search
1 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'pdbj-pdb', query = 'p53'
1
3u154agp4ago4agn4agl4agm4djn2w1h2ljx3mhr2ljy4aze3zrk3zrl3zrm2ljz3spr3vbg4dij2v5w2o6v2kvr2h2f2h2d3smn3sml3smk3smm3smo4afl4f792oow4acm4azf4agq2uue4a634f2k2ly43lnj3r5j3fga1h3i2axi3r6g3tpx1e9h2vt83iot3rjm2v5x3tj22iae3iwy3r6l2lvm3r7b3v3b3r7n3vd23vd13vd01jnx1r783jsf2j202c6k2c6i2o5k2j1z2fvd2h1l1vyz2bhh1ke61h0v2zcb2o962iom2g451jsv3ijj2wqi2x0w2o8d1t4w1gzh2vth2ioi2c5o1p1g1g5s1f5q3b7b2o4r2gbm1y982f1w1t2u1pxk
25: DBSearch Main
14 lines
format: tabular, database: dbsearch
Info: DBSearch Main
123456
蛋白質核酸酵素:ゲノムベクターを用いたゲノム丸ごとクローニングhttp://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=2006&number=5101&file=61_51_2006 蛋白質核酸酵素 51 1 2006 61-67 Short Review ゲノムベクターを用いたゲノム丸ごとクローニング A who クテリア(藍色細菌, ラン藻)の一種, Synechocystis sp. <strong class="key1">PCC6803</strong> のゲノムに決めた^. 足場配列はPCRにより調製するので塩 基配列情報が必須であるが, <strong class="key1">PCC6803</strong> は1996年, かずさDNA研究所の金子らにより全塩基配列が報 塩基配列が報告されていたバクテリアのなかで, 枯草菌と<strong class="key1">PCC6803</strong> 以外は病原性微生物であるかどうか安全性の保証がなかっ たので, <strong class="key1">PCC6803</strong> ゲノムを枯草菌ゲノムベクターにメガクローニングする組 pne_merge14756
蛋白質核酸酵素:ラン藻における膜系の構築と低温耐性の機構 http://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=1991&number=3609&file=1604_36_1991 蛋白質核酸酵素 36 9 1991 1604-1610 特集 ラン藻の分子構築とその機構 ラン藻における膜系の構築と低温 18 : 2(9, 12) と18 : 3(9, 12, 15) を,Synechocystis <strong class="key1">PCC 6803</strong> は, 18 : 3(6, 9, 12) と18 : 4(6, 9, 12, 15) を含ん : 0が結合している。A. variabilis と Synechocystis <strong class="key1">PCC 6803</strong> の場合には, グリセロールの1位にはおもに炭素数18の脂 化酵素の遺伝子を低温耐性のラン藻である Synechocystis <strong class="key1">PCC6803</strong> から単離し, これを用いた形質転換によって低温感受性の の生理活性が非可逆的に失われる。 図4. Synechocystis <strong class="key1">PCC6803</strong> の野生株および不飽和化欠損変異株 (Fad12) における脂質 pne_
merge 9890
蛋白質核酸酵素:ラン藻の物質輸送系http://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=1991&number=3609&file=1611_36_1991 蛋白質核酸酵素 36 9 1991 1611-1615 特集 ラン藻の分子構築とその機構 ラン藻の物質輸送系 Transport も進み, さらに SynechococcusPCC7942やS Synechocystis <strong class="key1">PCC6803</strong> などで遺伝子操作が可能になって^, ラン藻の物質輸送系の つラン藻, Synechococcus PCC7942および Synechocystis <strong class="key1">PCC6803</strong> から単離されており, それぞれの変異株の変異部位を修復 伝子のC_i輸送における役割 グループ2の Synechocystis <strong class="key1">PCC6803</strong> の変異株, RKaと RKb と相補するクローンを単離・解析す 異なる。光合成系の研究によく用いられる Synechocystis <strong class="key1">PCC6803</strong> はグルコースの利用能力をもつラン藻の一種であり, グル pne_merge8927
蛋白質核酸酵素:酸素発生型光合成を行なうシアノバクテリア(ラン藻) : Synechocystis sp.PCC6803のゲノムDNAの全塩基配列決定 http://lifesciencedb.jp/dbsearch/Literature/get_pne_cgpdf.php?year=1996&number=4116&file=2579_41_1996 蛋白質核酸酵素 41 16 1996 2579-2583 ゲノム情報 酸素発生型光合成を行なうシアノバクテリア(ラン藻) : Synechocystis sp.<strong class="key1">PCC6803</strong> のゲノムDNAの全塩基配列決定 Complete Genome Sequence of a Cyanobacterium Synechocystis sp. <strong class="key1">PCC 6803</strong> , the Oxygenic Photosynthetic Prokaryote 池内昌彦 発生型光合成を行なうシアノバクテリアSynechocystis sp.<strong class="key1">PCC6803</strong> のゲノムDNAの全塩基配列が,かずさDNA研究所の田畑らのグ 同定されるものと期待される。 今回のSynechocystis sp. <strong class="key1">PCC6803</strong> のゲノムサイズ3.6Mbpは,約2.7MbpのSynechococcusから6. pne_merge
8699
26: Pasted Entry
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format: txt, database: ?
Info: uploaded txt file
Interferons inhibit activation of STAT6 by interleukin 4 in human
monocytes by inducing SOCS-1 gene expression.
27: StdinProtainTagging-CPE on data 26
empty
format: tabular, database: ?
28: StdinPPIExtraction-CPE on data 26
empty
format: tabular, database: ?
29: Pasted Entry
2 lines
format: txt, database: ?
Info: uploaded txt file
Interferons inhibit activation of STAT6 by interleukin 4 in human
monocytes by inducing SOCS-1 gene expression.
30: StdinProtainTagging-CPE on data 29
empty
format: tabular, database: ?
31: Pasted Entry
1 lines, 4 comments
format: gff3, database: ?
Info: uploaded gff3 file
1.Seqid
##gff-version 3
##Note: See http://song.sourceforge.net
ctgA example contig 1 50000 . . . Name=ctgA
ctgA example remark 1659 1984 . + . Name=f07;Note=This is an example
ctgA example remark 3014 6130 . + . Name=f06;Note=This is another example
32: Pasted Entry
1 lines, 4 comments
format: gff3, database: ?
Info: uploaded gff3 file
1.Seqid
##gff-version 3
##Note: See http://song.sourceforge.net
ctgA example contig 1 50000 . . . Name=ctgA
ctgA example remark 1659 1984 . + . Name=f07;Note=This is an example
ctgA example remark 3014 6130 . + . Name=f06;Note=This is another example
33: GFF3-to-RDF/Turtle on data 32
30 lines
format: ttl, database: ?
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix so: <http://purl.org/obo/owl/SO#> .
34: DBSearch Main
3 lines
format: tabular, database: dbsearch
Info: DBSearch Main
123456
Glycogenes/Beyond Glycogeneshttp://glycoforum.gr.jp/science/glycogenes/15/15E.html generator=Adobe GoLive 5 Summary Introduction Biosynthesis of the sugar donor The enzymes Functi GlcNAc modified proteins. Among them are -catenin, <strong class="key1">p53</strong> , pRb family members, and c-Myc 4 . In particular, glycoforum11228
EP0004http://www.glyco.is.ritsumei.ac.jp/epitope-bin/epitope.cgi?epitope_id=EP0004&mode=glycoprotein 270kDa Ankyrin G isoform (Rattus norvegicus) NCBI/Gene::361833,Swissprot:O70511: S1520_Rattus no sferase,Swissprot::O-GlcNAc transferase [12829252] <strong class="key1">P53</strong> /Tumor suppressor <strong class="key1">p53</strong> NCBI/Gene::Cellular tumor ant igen <strong class="key1">p53</strong> (Tumor suppressor <strong class="key1">p53</strong> ),Swissprot::Cellular tumor a ntigen <strong class="key1">p53</strong> (Tumor suppressor <strong class="key1">p53</strong> ) [11532966][12829252][863291 5][8707423] <strong class="key1">P53</strong> /Tumor suppressor <strong class="key1">p53</strong> (Homo sapiens) NCBI/Gene::Cel glycoepitope_glycoprotein10758
Glycogenes/Beyond Glycogeneshttp://glycoforum.gr.jp/science/glycogenes/15/15J.html generator=Adobe GoLive 5 要旨 はじめに 糖供与体の生合成 酵素について O-GlcNAcの機能 疾患との関連 パク質として同定された。それらの中には、β-カテニン、<strong class="key1">p53</strong> 、pRbファミリーおよびc-Mycがある 4 。特に、c-Mycにお glycoforum7485
35: TogoWS Search
100 lines
format: tabular, database: ?
Info: Searching TogoWS with database = 'kegg-genes', query = 'p53'
12
hsa:23574PRG1; p53-responsive gene 1
hsa:2593GAMT, PIG2, TP53I2; guanidinoacetate N-methyltransferase (EC:2.1.1.2); K00542 guanidinoacetate N-methyltransferase [EC:2.1.1.2]
hsa:7566ZNF18, HDSG1, KOX11, ZKSCAN6, ZNF535, ZSCAN38, Zfp535; zinc finger protein 18; K09229 KRAB and SCAN domains-containing zinc finger protein
hsa:11257TP53TG1, LINC00096, NCRNA00096, P53TG1, P53TG1-D, TP53AP1; TP53 target 1 (non-protein coding)
hsa:27296TP53TG5, C20orf10, CLG01; TP53 target 5
hsa:64065PERP, KCP1, KRTCAP1, PIGPC1, RP3-496H19.1, THW, dJ496H19.1; PERP, TP53 apoptosis effector; K10136 TP53 apoptosis effector